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BioBricks Knowledge Graph

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6,182,284,189 triples online
SPARQL: https://yard.toxindex.com/query

AI Query Assistant Powered by Vertex AI

Datasets

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Select a dataset to see its columns and sample data.

Click a dataset to generate a query for it.

SPARQL Query

Example Queries (click to load)

FDA-approved drugs - toxicity profile

ADMET-AI toxicity predictions for DrugBank approved drugs

toxicity LD50 ADMET

High cardiac risk (hERG inhibition)

Drugs with highest hERG channel inhibition - cardiac safety concern

cardiac hERG safety

Mutagenic compounds (Ames positive)

Compounds predicted positive for Ames mutagenicity test

mutagenicity Ames genotoxicity

Liver toxicity risk (DILI)

Drug-induced liver injury predictions

liver DILI hepatotoxicity

Blood-brain barrier penetration

Compounds predicted to cross the blood-brain barrier

BBB CNS permeability

List all datasets (bricks)

Show all BioBricks datasets with table counts

metadata overview CSVW

Tables in ADMET-AI brick

List all tables within the ADMET-AI dataset

CSVW exploration schema

Sample any 5 triples

Quick exploration - get 5 random triples from the graph

exploration sample

Find predicates for a brick

Discover available columns/predicates in ADMET-AI

schema exploration

Safest drugs (low toxicity)

Drugs with best overall safety profile

safety low-toxicity

Count triples per brick

Statistics: how many triples in each dataset

statistics metadata

Drug with SMILES structure

Get drug names with their SMILES molecular structures

structure SMILES chemistry